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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41687991_41689179_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41687991 - 41689179
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GTTTCAATAAAT
Flanking Amino Acid:
RNLKACHPAEETPSNWSIET
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
56.7
0.29
2
81.06
39.4

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259