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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41692792_41693617_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41692792 - 41693617
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
GTTACTGAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTACTGAACT
Flanking Amino Acid:
IISDPAYITQIMATLFEELE
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
55.8
0.13
1.1
48.6
44
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
70.4
0.72
1.6
87.42
37.1

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259