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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41693786_41694667_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41693786 - 41694667
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTGTTCTTACAA
Flanking Amino Acid:
MKILHEVHGEMILSHLLPAL
Intron Amino Acid Position:
1042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.2
0.79
0.8
79.9
32.1
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
53.7
0.11
1.8
63.53
43.1

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259