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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41697662_41698398_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41697662 - 41698398
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATTTTG
5'SS Class:
major
3'SS Sequence:
CCTGAATGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTCCTGAATG
Flanking Amino Acid:
LVPALFNLLSRCLEPQASEE
Intron Amino Acid Position:
1250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
72
40.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
60.7
0.24
1
53.6
40.4
Minor 5ss
44.4
-0.6
2.8
59.2
45.2
Minor BPS
71
0.52
1.5
72.16
41

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259