Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41700410_41700855_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41700410 - 41700855

Intron Length:

446

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTTG

5'SS Class:

strong_major

3'SS Sequence:

TGTACTTAAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

CTGTACTTAAAT

Flanking Amino Acid:

VQMVIPALIQAEDSDLSESS

Intron Amino Acid Position:

1374

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

81.2

33.8

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

63.1

0.3

59.3

40.8

Minor 5ss

43.2

-0.7

2.9

57.8

46.8

Minor BPS

0.55

1.7

78.27

43.6

Associated Gene:

Gene:

HEATR1

Ensembl Gene ID:

ENSAPLG00000008015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008453

41675148 - 41712406

37259