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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41703149_41703988_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41703149 - 41703988
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTCAACA
Flanking Amino Acid:
YLTELPENKEDDPGPKKSRT
Intron Amino Acid Position:
1493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
74.7
0.56
1
70.5
39.5
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
61.6
0.36
1.5
69.29
37.3

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259