About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41704761_41705219_F

Intron Information:

Intron Rank:
32
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41704761 - 41705219
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
GCTTCCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTTACGTACTA
Flanking Amino Acid:
ETEELQKLEQRLLEDVLHYI
Intron Amino Acid Position:
1564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
69.7
0.44
0.9
61.8
39.9
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
46.2
-0.2
2.3
64.78
41.9

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259