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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41706377_41706590_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41706377 - 41706590
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTCCTTCAAGC
Flanking Amino Acid:
QQRTRWQKSQIRQLLELVPE
Intron Amino Acid Position:
1653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.7
0.71
0.8
73.6
36.9
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
51.3
0.02
1.8
64.91
40.5

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259