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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41706881_41707545_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41706881 - 41707545
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTTG
5'SS Class:
weak_major
3'SS Sequence:
TGCTTATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTCTCCATATTT
Flanking Amino Acid:
LKAQAIPQLPRLMPALLKTL
Intron Amino Acid Position:
1749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
63
43.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
78.1
0.63
0.9
72.3
36.9
Minor 5ss
57
0.24
2.7
72.7
44.5
Minor BPS
52.9
0.17
1.9
72.34
45

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259