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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41709390_41709482_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41709390 - 41709482
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTGCATTTCACT
Flanking Amino Acid:
EASFRPLFFKLFDWSKTEST
Intron Amino Acid Position:
1933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
82.5
0.73
0.8
78.8
34.1
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
51.4
0.12
2
74.11
42.8

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259