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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41710539_41710893_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41710539 - 41710893
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGATCCTGGATC
Flanking Amino Acid:
ETLMMPLVDQLENMLGGDEK
Intron Amino Acid Position:
2041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
61.5
0.35
1.5
68.16
37.3

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259