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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41711912_41712317_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41711912 - 41712317
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAGTT
Flanking Amino Acid:
SIPFLAELMEDECEEVEQQC
Intron Amino Acid Position:
2130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.8
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
36.6
-1.5
3.2
51.3
45.2
Minor BPS
60.3
0.4
1.7
79.25
37.1

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259