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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41714543_41714887_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41714543 - 41714887
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
AGGAACTTAACT
Flanking Amino Acid:
FPFSPGMYFELIIFCDAHQF
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
92.6
0.96
0.6
91.5
19.7
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
62.2
0.46
1.6
73.51
42.5

Associated Gene:

Gene:
LGALS8
Ensembl Gene ID:
ENSAPLG00000007822
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008160
41714393 - 41724015
9623
ENSAPLT00000021834
41714393 - 41724015
9623