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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41715054_41715449_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41715054 - 41715449
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
AAATATCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAAAAATA
Flanking Amino Acid:
IKGEMNKNPKSFAINLKSSE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.1
0.45
1
59.4
45.8
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
45
-0.3
2.2
66.63
39.6

Associated Gene:

Gene:
LGALS8
Ensembl Gene ID:
ENSAPLG00000007822
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021834
41714393 - 41724015
9623
ENSAPLT00000008160
41714393 - 41724015
9623