About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41715539_41716592_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41715539 - 41716592
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
GATGAACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AAGTTTTTCACT
Flanking Amino Acid:
NGEMPDGSQFGVPYIGKLDS
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
60.2
0.23
1
48.5
44.6
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
55.3
0.25
1.7
70.54
40.9

Associated Gene:

Gene:
LGALS8
Ensembl Gene ID:
ENSAPLG00000007822
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021834
41714393 - 41724015
9623
ENSAPLT00000008160
41714393 - 41724015
9623