About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41730948_41736476_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41730948 - 41736476
Intron Length:
5529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTAAAACCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTGCTTTTACA
Flanking Amino Acid:
LTSDTGLVQQQQILTSLHVM
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
54.4
0.1
1
44.1
41.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
60.9
0.34
1.7
71.79
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023427
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033818
41730528 - 41745181
14654