About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41760753_41761018_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41760753 - 41761018
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
CCATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATGCTCTCATTT
Flanking Amino Acid:
SVAWLQDLSPRDIKLTLPEL
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.4
0.73
0.8
80
31.7
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
47.3
-0.1
1.7
63.59
41.1

Associated Gene:

Gene:
AGT
Ensembl Gene ID:
ENSAPLG00000015860
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016548
41759451 - 41766714
7264