About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41786722_41787363_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41786722 - 41787363
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTTTTCTAAATA
Flanking Amino Acid:
PDYAGIFHFQFWQHNEWLDV
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
72.9
0.52
0.9
70.6
33.9
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
65.3
0.48
1.7
74.1
38.6

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809