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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41787498_41788037_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41787498 - 41788037
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCACGGTTAGCA
Flanking Amino Acid:
WSALLEKAYAKLNGSYEALK
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
78.8
0.65
1
69.7
45.4
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
41.2
-0.6
2.4
53.37
44.8

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809