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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41789196_41789406_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41789196 - 41789406
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
GCTTAATGACAC
Flanking Amino Acid:
HAYSVTGIDEVSYRGQKVQL
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
67
0.42
1.1
57.7
39
Major PPT
85.6
0.8
0.7
84.5
23.3
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
39.1
-0.8
2
47.83
40.8

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809