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Intron Name: Anas_platyrhynchos_platyrhynchos_3_41789493_41791270_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41789493 - 41791270

Intron Length:

1778

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGCGTGCG

5'SS Class:

major

3'SS Sequence:

TGTTTTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAA

U12 Branch Point Sequence:

AGACCCATAGTA

Flanking Amino Acid:

QVEWNGPWSDNSLEWRLVSP

Intron Amino Acid Position:

421

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

59.7

39.5

Major BPS

67.4

0.43

1.1

67.9

36.3

Major PPT

89.8

0.89

0.7

84.9

29.9

Minor 5ss

28.2

-2.5

3.2

32.1

36.2

Minor BPS

46.2

-0.2

1.8

54.62

37.3

Associated Gene:

Gene:

CAPN9

Ensembl Gene ID:

ENSAPLG00000014110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014718

41780753 - 41808561

27809