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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41791349_41795551_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41791349 - 41795551
Intron Length:
4203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATGTCTTTCATC
Flanking Amino Acid:
SQTALDDGEFWMKFEDFKVH
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
65
41.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.8
0.63
0.9
69.9
40.6
Minor 5ss
38.3
-1.3
3.1
47.8
42.4
Minor BPS
59.1
0.27
1.7
67.96
38.5

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809