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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41800421_41800862_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41800421 - 41800862
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TGTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTGTCTTATTG
Flanking Amino Acid:
EYVLNAVLKNKKDIKFKKLS
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
85.7
0.8
0.8
80.4
31.6
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
52
-0
1.8
57.89
44.8

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809