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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41800928_41803248_F

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
41800928 - 41803248
Intron Length:
2321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTCAAATTACTAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
SCRNIISLMDTSGNGTLEFS
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
64.4
42.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
63.6
0.31
1
56.1
43.2
Minor 5ss
98.3
1.62
0.6
94.6
16.9
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809