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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41805836_41806892_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41805836 - 41806892
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
NCLIRLENASRVFQALSVKN
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.3
74
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
36.4
-1.5
2.9
46.4
36.1
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809