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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41806952_41807534_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41806952 - 41807534
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGATATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTACTGTAAAT
Flanking Amino Acid:
KEFINLNIGEFINLAMNI*
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.4
0.41
0.9
67.4
37.7
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
56.7
0.29
2.1
81.86
39.5

Associated Gene:

Gene:
CAPN9
Ensembl Gene ID:
ENSAPLG00000014110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014718
41780753 - 41808561
27809