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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41851695_41853678_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41851695 - 41853678
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTGCATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATCTCTTAAATT
Flanking Amino Acid:
EVSGKIPKGKLVDFEAMTAP
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.8
1.18
0.7
98.3
5.31
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.1
0.63
0.9
73.9
40.7
Minor 5ss
30
-2.3
3.8
44.9
43.2
Minor BPS
64
0.52
1.6
77.48
40

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318