About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41853758_41854904_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41853758 - 41854904
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
AAGACTTTGACT
Flanking Amino Acid:
YNLMPLSRGSSVIAYSVIMG
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
29.9
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
30.7
-2.2
3.1
40.9
45.4
Minor BPS
62.5
0.47
1.3
70.81
40.2

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318