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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41857218_41859400_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41857218 - 41859400
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTACTCTAATA
Flanking Amino Acid:
KVEDLLPIMKQFNSKTRDGF
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.2
0.48
1.1
74.6
34.1
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
63.7
0.42
1.7
76.76
34.1

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318