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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41861116_41865365_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41861116 - 41865365
Intron Length:
4250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AGGACTTTAAAG
Flanking Amino Acid:
RGFNNHINLIRGQVINMRYL
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.7
37.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
52.5
-0
1.5
52.71
41.7

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318