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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41867295_41867688_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41867295 - 41867688
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAGTATTTAATT
Flanking Amino Acid:
PEYLKVKYLREYSRYLHAHL
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.4
0.86
0.7
81.3
30.8
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
59.9
0.39
1.5
69.55
41.9

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318