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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41867864_41869173_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41867864 - 41869173
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATTCCTTTAACC
Flanking Amino Acid:
SLDEALKNFKRCLQLEPYNE
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76
0.58
0.9
67
40
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
79.5
0.9
1.1
82.43
30.4

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318