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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41873454_41874245_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41873454 - 41874245
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTGCTTTATCA
Flanking Amino Acid:
HRGTLYFISEDYATAHEDFQ
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.6
37.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
78
0.63
0.9
72.6
36.4
Minor 5ss
28.4
-2.5
2.9
33
41.8
Minor BPS
60.8
0.34
1.7
70.42
42.6

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318