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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41875082_41876453_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41875082 - 41876453
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
AGTTGTTTACCT
Flanking Amino Acid:
GIAYGKKGLHDVKNAELALF
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
86.2
0.81
0.7
83.9
24.1
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
53.7
0.2
2
74.64
42.4

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318