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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41882904_41884678_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41882904 - 41884678
Intron Length:
1775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGACGG
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATTCCTAAAGG
Flanking Amino Acid:
EWAEQYAAECDSSFLHFRES
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
53.7
45.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
26.4
-2.7
2.9
31.3
42.2
Minor BPS
54.9
0.02
2
62.87
44.8

Associated Gene:

Gene:
TTC13
Ensembl Gene ID:
ENSAPLG00000013644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014281
41849557 - 41884874
35318