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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41885165_41893999_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41885165 - 41893999
Intron Length:
8835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTATGATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
QRGVLRIALCKSCQKPVDKY
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
68.4
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.1
0.7
0.9
77.9
40.2
Minor 5ss
31.5
-2.1
2.6
32.2
35
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
ARV1
Ensembl Gene ID:
ENSAPLG00000013578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014145
41885066 - 41897676
12611