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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41894120_41895747_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41894120 - 41895747
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTTCTTTCATT
Flanking Amino Acid:
RHILFNTKINIHGKLCVFCL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.3
0.68
0.9
74.2
39.9
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
68
0.65
1.7
84.22
37.1

Associated Gene:

Gene:
ARV1
Ensembl Gene ID:
ENSAPLG00000013578
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014145
41885066 - 41897676
12611