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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41989832_41991313_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41989832 - 41991313
Intron Length:
1482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CTGGTCTTATTT
Flanking Amino Acid:
VCVNEEGMQRLQHAIQEHPV
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
74.2
36.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
34.2
-1.8
2.8
40.4
39.1
Minor BPS
51.5
0.12
1.7
66.34
45.4

Associated Gene:

Gene:
GNPAT
Ensembl Gene ID:
ENSAPLG00000013047
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047339
41985336 - 42005035
19700
ENSAPLT00000013646
41985336 - 42005419
20084