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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41993993_41994441_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41993993 - 41994441
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTGTTTTACTT
Flanking Amino Acid:
FAEYVKTMLRNGYAPIEFFL
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
85.2
0.79
0.7
81.2
30.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
59.5
0.38
1.7
78.3
39.3

Associated Gene:

Gene:
GNPAT
Ensembl Gene ID:
ENSAPLG00000013047
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047339
41985336 - 42005035
19700
ENSAPLT00000013646
41985336 - 42005419
20084