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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41998952_41999945_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41998952 - 41999945
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
ALQMTRSFRKEEVYSCFSIL
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
GNPAT
Ensembl Gene ID:
ENSAPLG00000013047
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047339
41985336 - 42005035
19700
ENSAPLT00000013646
41985336 - 42005419
20084