About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42004965_42005375_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42004965 - 42005375
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAT
U12 Branch Point Sequence:
AAGTAAGTGATT
Flanking Amino Acid:
EAVNKILDVFDARIPVQKPV
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
64.7
0.36
1.2
55.1
42.1
Major PPT
86.1
0.81
0.9
87.9
29.5
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
40.3
-0.6
2.2
55.99
40.3

Associated Gene:

Gene:
GNPAT
Ensembl Gene ID:
ENSAPLG00000013047
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013646
41985336 - 42005419
20084