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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42012765_42013674_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42012765 - 42013674
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
AAGGCATAAACT
Flanking Amino Acid:
IFVSGKVVLTGAKVRAEIYE
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
82.2
0.72
0.7
76.4
32.2
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
47.7
-0
2
64.64
45.4

Associated Gene:

Gene:
TBP
Ensembl Gene ID:
ENSAPLG00000012687
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013232
42012685 - 42019746
7062