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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42013770_42014056_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42013770 - 42014056
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
ATGTCCGCAAGC
Flanking Amino Acid:
GLVLTHQQFSSYEPELFPGL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
45.4
-0.3
2.4
60.73
44.6

Associated Gene:

Gene:
TBP
Ensembl Gene ID:
ENSAPLG00000012687
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013232
42012685 - 42019746
7062