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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42015457_42017475_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42015457 - 42017475
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCACATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
ACAGTCTCAACA
Flanking Amino Acid:
RARNAEYNPKRFAAVIMRIR
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
71.9
0.49
0.9
66.9
38.3
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
51
0.03
1.6
58.28
41.4

Associated Gene:

Gene:
TBP
Ensembl Gene ID:
ENSAPLG00000012687
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013232
42012685 - 42019746
7062