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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42017564_42018700_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42017564 - 42018700
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
GAACTATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACTTTTTAATT
Flanking Amino Acid:
SESSGIVPQLQNIVSTVNLG
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
66.3
39.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.1
0.41
1
63.1
42.7
Minor 5ss
33
-1.9
3.3
45.7
43.5
Minor BPS
72.9
0.8
1.1
80
36.6

Associated Gene:

Gene:
TBP
Ensembl Gene ID:
ENSAPLG00000012687
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013232
42012685 - 42019746
7062