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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42019033_42019692_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42019033 - 42019692
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCAGGAT
U12 Branch Point Sequence:
CTTTTTTCCACA
Flanking Amino Acid:
PYAQGLASPQGAMTPGIPIF
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
41.9
-0.5
1.5
33.4
42.7
Major PPT
87.7
0.85
0.6
83.6
24.8
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
49.4
-0
2
66.33
40.9

Associated Gene:

Gene:
TBP
Ensembl Gene ID:
ENSAPLG00000012687
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013232
42012685 - 42019746
7062