Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42021253_42022082_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42021253 - 42022082

Intron Length:

830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

ATTCTTTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATGAA

U12 Branch Point Sequence:

ATGATATGAACA

Flanking Amino Acid:

YRFSPYTFNGGTVLAIAGED

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.4

40.3

Major BPS

66.7

0.41

57.8

Major PPT

78.8

0.65

83.3

31.3

Minor 5ss

-2.2

2.9

34.5

Minor BPS

48.6

-0.1

1.7

60.61

38.8

Associated Gene:

Gene:

PSMB1

Ensembl Gene ID:

ENSAPLG00000012435

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012962

42021149 - 42026110

4962