Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42023637_42024060_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42023637 - 42024060

Intron Length:

424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCTATC

5'SS Class:

major

3'SS Sequence:

GTGCCGTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGGAT

U12 Branch Point Sequence:

TTGCCTTGGATG

Flanking Amino Acid:

LTKIIEARLKMYKHSNNKTM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

1.2

76.2

39.9

Major BPS

59.1

0.23

1.4

60.7

45.9

Major PPT

72.4

0.5

41.2

Minor 5ss

44.4

-0.6

62.6

42.2

Minor BPS

49.5

-0.1

1.5

56.17

39.8

Associated Gene:

Gene:

PSMB1

Ensembl Gene ID:

ENSAPLG00000012435

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012962

42021149 - 42026110

4962