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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42024601_42025924_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42024601 - 42025924
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTCATTTAAAA
Flanking Amino Acid:
AMLQPLLDNQIGFKNMQNVE
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
100
1.24
0.5
100
0
Major PPT
74.9
0.56
0.8
73.2
31.3
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
56.3
0.19
1.6
67.09
39

Associated Gene:

Gene:
PSMB1
Ensembl Gene ID:
ENSAPLG00000012435
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012962
42021149 - 42026110
4962