About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42083163_42086579_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42083163 - 42086579
Intron Length:
3417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAGAAT
5'SS Class:
major
3'SS Sequence:
GTTTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTCCTCACAACT
Flanking Amino Acid:
DRRRRFHLPPRSPR*
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
72.3
38.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
80.3
0.68
0.8
77.9
36.6
Minor 5ss
33.8
-1.8
3.4
48.8
47.2
Minor BPS
47.7
-0
1.8
66.17
44.3

Associated Gene:

Gene:
FAM120B
Ensembl Gene ID:
ENSAPLG00000012280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012798
42083150 - 42132734
49585